46 lines
1.4 KiB
YAML
46 lines
1.4 KiB
YAML
name: Generate and submit updated subject records from a TSV table
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description: TODO
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inputs:
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study-pid:
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required: true
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default: ""
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description: PID of the study associated with the TSV table. Should match a corresponding study record in the knowledge pool.
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jwt-audience-claim:
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required: true
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default: ""
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description: Audience claim used to request the Forgejo JWT used for knowledge pool submission.
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tsv-file:
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required: true
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default: ""
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description: Path to the TSV file containing subject rows within the repository.
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options:
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required: false
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default: ""
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description: Additional command-line options forwarded to `update_subject_records.py`.
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runs:
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using: composite
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steps:
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- name: Fetch knowledge pool token
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id: jwt
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uses: https://hub.trr379.de/actions/fetch-forgejo-jwt@v1
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with:
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audience: ${{ inputs.jwt-audience-claim }}
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- name: Submit records
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shell: bash
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env:
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ACTION_PATH: ${{ forgejo.action_path }}
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DTC_TOKEN: ${{ steps.jwt.outputs.jwt }}
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STUDY_PID: ${{ inputs.study-pid }}
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TSV_FILE: ${{ inputs.tsv-file }}
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OPTIONS: ${{ inputs.options }}
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run: |
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set -euo pipefail
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file_blob_sha=$(git rev-parse HEAD:${TSV_FILE})
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uv run --quiet "${ACTION_PATH}/update_subject_records.py" \
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${OPTIONS} \
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"${STUDY_PID}" \
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"dldi:${file_blob_sha}" \
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"${TSV_FILE}"
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