From d63b522b2a381627d8258dc15f58be24c5a8685b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Micha=C5=82=20Szczepanik?= <m.szczepanik@fz-juelich.de>
Date: Fri, 14 Nov 2025 19:46:28 +0100
Subject: [PATCH] Change DataItem part_of values to link to the dataset

After datalad dataset id convention was changed in 3590aca, the old IDs
remained in DataItems. This does the following replacement:

old - "part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078"
new - "part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset"

AFAICS the TRR379DataItem still has the `part_of` slot with
TRR379Dataset range, so I am assuming this was just an ommission.
---
 .../flatbids/mri-phantom-scans-DataItem.jsonl | 78 +++++++++----------
 1 file changed, 39 insertions(+), 39 deletions(-)

diff --git a/records/flatbids/mri-phantom-scans-DataItem.jsonl b/records/flatbids/mri-phantom-scans-DataItem.jsonl
index d3e5e09..48635c2 100644
--- a/records/flatbids/mri-phantom-scans-DataItem.jsonl
+++ b/records/flatbids/mri-phantom-scans-DataItem.jsonl
@@ -1,39 +1,39 @@
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_T1w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_T2w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-b1200_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-b1200_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-mshell_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-mshell_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_dir-ap_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_dir-pa_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_task-rest_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_T1w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_T2w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_acq-b1200_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_acq-b1200_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_acq-mshell_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_acq-mshell_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-ap_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-ap_run-2_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-ap_run-3_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-pa_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-pa_run-2_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_dir-pa_run-3_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_task-rest_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_task-restvida_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-f_task-restvidn_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_T1w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_T2w"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_acq-b1200_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_acq-b1200_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_acq-mshell_dwi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_acq-mshell_sbref"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-ap_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-ap_run-2_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-ap_run-3_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-pa_run-1_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-pa_run-2_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_dir-pa_run-3_epi"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_task-rest_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_task-restvida_bold"}
-{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-m_task-restvidn_bold"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_T1w"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_T2w"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-b1200_dwi"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-b1200_sbref"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-mshell_dwi"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_acq-mshell_sbref"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_dir-ap_run-1_epi"}
+{"broad_mappings":["obo:OBI_0003328"],"generated_by":{"object":"obo:MAXO_0000424","used":{"object":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a"}},"part_of":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/dl/dataset","pid":"datalad:698cec3c-e424-47e0-9da4-7a75e5ed6078/bids/sub-a_dir-pa_run-1_epi"}
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-- 
2.52.0