neurobagel-recipes/CHANGELOG.md

v0.4.1 (Thu Jan 09 2025)

🚀 Enhancements

• [ENH] Add NGINX timeout config file #100 (@surchs)

Authors: 1

• Sebastian Urchs (@surchs)

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v0.4.0 (Mon Dec 16 2024)

🚀 Enhancements

• [ENH] Add NB_MIN_CELL_SIZE env var & reorder env var table for better flow #98 (@alyssadai)

Authors: 1

• Alyssa Dai (@alyssadai)

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v0.3.0 (Thu Oct 31 2024)

🚀 Enhancements

• [ENH] Update reference example JSONLD with derivatives metadata #92 (@alyssadai)

🐛 Bug Fixes

• [FIX] Update nb_vocab.ttl with imaging/phenotypic sessions and pipeline classes #89 (@alyssadai)

🏠 Internal

• [MNT] Removed .env volume from graph service #90 (@rmanaem)

Authors: 2

• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)

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v0.2.0 (Thu Sep 26 2024)

💥 Breaking Changes

• [REF] Create GraphDB password secrets from .txt files instead of env variables #84 (@alyssadai)

🚀 Enhancements

• [REF] Change default profile from local_node to full_stack #86 (@alyssadai)
• [REF] Remove container-internal ports and unneeded graph config vars #80 (@alyssadai)

Authors: 1

• Alyssa Dai (@alyssadai)

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v0.1.0 (Wed Aug 14 2024)

💥 Breaking Changes

• [MNT] Renamed NB_QUERY_URL_PATH env var to NB_QUERY_APP_BASE_PATH #77 (@rmanaem)
• [ENH] Removed local_node_query profile #72 (@rmanaem)

🚀 Enhancements

• [FIX] Revert default image tags to latest #79 (@alyssadai)

🏠 Internal

• [MNT] Updated compatibility.yaml file and e2e tests #78 (@rmanaem)

Authors: 2

• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)

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v0.0.1 (Wed Aug 07 2024)

🎉 This release contains work from new contributors! 🎉

Thanks for all your work!

❤️ Alyssa Dai (@alyssadai)

❤️ Arman Jahanpour (@rmanaem)

❤️ Sebastian Urchs (@surchs)

Release Notes

[CI] Make first release (#76)

First release of the Neurobagel deployment recipe. This release introduces different deployment profiles and an automated process for setting up a graph store using Docker Compose, as well as various environment variables for configuring the behaviour of Neurobagel services using a single .env file.

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🚀 Enhancements

• [CI] Make first release #76 (@alyssadai)
• [ENH] Added NB_QUERY_APP_BASE_PATH #69 (@alyssadai @rmanaem)
• [ENH] add auth vars to n-API & local query tool and disable by default #67 (@alyssadai)
• [ENH] Update environment variables and remove deprecated version tag #65 (@alyssadai)
• [ENH] Added NB_FEDERATE_REMOTE_PUBLIC_NODES env var #61 (@rmanaem)
• [FIX] Enable graph setup to run on stack restart #57 (@surchs)
• [MNT] Use docker compose secrets for sensitive credentials #50 (@alyssadai)
• [ENH] Add COMPOSE_PROJECT_NAME to template.env #48 (@alyssadai)
• [REF] Consolidate deployment recipes and refactor template.env #46 (@alyssadai)
• [ENH] Separate /data mount points, separate query tool profiles #44 (@alyssadai)
• [FIX] Remove default NB_API_QUERY_URL value and fix ports used by full-stack setup script #42 (@alyssadai)
• [FIX] Use NB_GRAPH_ROOT_CONT in setup.sh #43 (@surchs)
• [ENH] Add single docker compose recipe for all deployment flavours #32 (@rmanaem @surchs @alyssadai)
• [FIX] Switch query tool port to default used by Vite #31 (@alyssadai)
• [REF] Rename API_QUERY_URL to NB_API_QUERY_URL #26 (@alyssadai)
• [FIX] Consolidate add_data_to_graph.sh #23 (@alyssadai @surchs)
• [ENH] Add GraphDB setup script #19 (@alyssadai)
• [FIX] Update environment variable table with GraphDB defaults #17 (@alyssadai)
• [REF] Switch to opt-in Stardog syntax #13 (@surchs)
• [REF] Move vocab turtle file from api repo #15 (@surchs @alyssadai)
• [FIX] Use host-gateway instead of localhost in local federation config #6 (@alyssadai)
• [ENH] Add configuration files and templates for different deployment flavours #2 (@alyssadai)

⚠️ Pushed to main

• Initial commit (@alyssadai)

🧪 Tests

• [FIX] Fix the compatibility workflows #51 (@surchs)
• [ENH] Add version compatibility check for all latest builds #37 (@surchs)
• [CI] Set up compatibility test workflow #35 (@rmanaem)

Authors: 3

• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)
• Sebastian Urchs (@surchs)